Ok, here's a pair of pics. Basically what you see here are three ground wires - battery to alternator bracket, alternator bracket to body, and body back to battery.
Then there are two hot lines - alternator to the new mega fuse, and fuse back to battery (which parallels the existing stock wire). I did away with the original wire from the alternator to the red box.
The other cables on the hot post are for the audio setup. Also you can see the 60A maxi-fuse I added to run the efans off of (using the spare maxi location closest to the front of the vehicle.
Does this help any?